OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 5gud [A6]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

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Slab plane

Direction	Proportion
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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C
D	D
E	E
F	F

Title

GLUTAMATE DEHYDROGENASE FROM CORYNEBACTERIUM GLUTAMICUM (ALPHA- IMINOGLUTARATE/NADP+ COMPLEX)

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
5gud			28486765	X-RAY DIFFRACTION/1.68	2IT:(2Z)-2-IMINOPENTANEDIOIC ACID CIT:CITRIC ACID K:POTASSIUM ION NDP:NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A6]	[A6]	[A6]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
335057	A:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]
335065	A:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]
335063	B:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]
335056	B:2-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]
335306	C:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]
335307	C:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]
335055	D:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]
335062	D:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]
335312	F:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]
335313	F:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
5gudA01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5gudA02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5gudA03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5gudB01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5gudB02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5gudB03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5gudC01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5gudC02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5gudC03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5gudD01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5gudD02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5gudD03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5gudE02	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5gudF01	1.10.285.10		:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5gudF02	3.40.50.10860		:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5gudF03	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain