OLIGAMI : Oligomer Architecture and Molecular Interface

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Title

CRYSTAL STRUCTURE OF GLUTAMATE DEHYDROGENASE(GDH) FROM CORYNEBACTERIUM GLUTAMICUM

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
5ijz			25727019	X-RAY DIFFRACTION/2.29	AKG:2-OXOGLUTARIC ACID NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A6]	[A6]	[A6]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
315005	A:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315007	A:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315447	B:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315448	B:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315623	C:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315624	C:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315646	D:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315647	D:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315078	E:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315079	E:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315316	F:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315317	F:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315632	G:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315633	G:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315517	H:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315518	H:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315642	I:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315643	I:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315010	J:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315011	J:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315036	K:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
344275	K:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315087	L:1-197	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]
315088	L:198-447	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 196627]

CATH

CATH ID	Node	Architecture	Topology	Homology
5ijzA01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzA02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzA03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5ijzB01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzB02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzB03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5ijzC01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzC02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzC03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5ijzD01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzD02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzD03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5ijzE01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzE02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzE03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5ijzF01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzF02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzF03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5ijzG01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzG02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzG03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5ijzH01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzH02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzH03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5ijzI01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzI02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzI03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5ijzJ01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzJ02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzJ03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5ijzL01	1.10.285.10	:Orthogonal Bundle	:Glutamate Dehydrogenase; Chain A, domain 3	:Glutamate Dehydrogenase, chain A, domain 3
5ijzL02	3.40.50.10860	:3-Layer(aba) Sandwich	:Rossmann fold	:Leucine Dehydrogenase, chain A, domain 1
5ijzL03	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	G
C	H
D	J
E	K
F	L

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