PDB ID : 5jdc [A3B]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

Direction Proportion
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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DD
Title
TRYPANOSOMA BRUCEI PTR1 IN COMPLEX WITH INHIBITOR NP-13 (HESPERETIN)

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
5jdc
27411733 X-RAY DIFFRACTION/1.78 6JP:(2S)-5,7-DIHYDROXY-2-(3-HYDROXY-4-METHOXYPHENYL)-2,3-DIHYDRO-4H-1-BENZOPYRAN-4-ONE
ACT:ACETATE ION
CSX:S-OXY CYSTEINE
GOL:GLYCEROL
NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
OCS:CYSTEINESULFONIC ACID
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A3B] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
321388 A:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesDihydropteridin reductase (pteridine reductase)Trypanosoma brucei [TaxId: 5702]
321485 B:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesDihydropteridin reductase (pteridine reductase)Trypanosoma brucei [TaxId: 5702]
321389 C:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesDihydropteridin reductase (pteridine reductase)Trypanosoma brucei [TaxId: 5702]
321457 D:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesDihydropteridin reductase (pteridine reductase)Trypanosoma brucei [TaxId: 5702]

CATH
CATH ID Node Class Architecture Topology Homology
5jdcA003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
5jdcB003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
5jdcC003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
5jdcD003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain