OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 5k59 [ABCD]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

Download

Slab plane

Direction	Proportion
From front	%
From back	%
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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	D
B	B
C	E
D	F

Title

CRYSTAL STRUCTURE OF LUKGH FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH A NEUTRALISING ANTIBODY

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
5k59			27467113	X-RAY DIFFRACTION/2.84	CL:CHLORIDE ION PG4:TETRAETHYLENE GLYCOL PO4:PHOSPHATE ION

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[ABCD]	[A2BC]	[A2B2]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
321106	A:	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	Staphylococcus aureus [TaxId: 367830]
321208	B:	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	Staphylococcus aureus [TaxId: 367830]
321100	C:	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	Staphylococcus aureus [TaxId: 367830]
321170	D:	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	Staphylococcus aureus [TaxId: 367830]
410260	E:	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]
321184	F:1-106	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]
321185	F:107-212	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C1 set domains (antibody constant domain-like)	automated matches	Human (Homo sapiens) [TaxId: 9606]
410261	H:	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]
321143	L:1-106	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]
321144	L:107-212	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C1 set domains (antibody constant domain-like)	automated matches	Human (Homo sapiens) [TaxId: 9606]

CATH

CATH ID	Node	Architecture	Topology	Homology
5k59A00	2.70.240.10	:Distorted Sandwich	:Leukocidin-like	:Leukocidin/porin MspA
5k59B00	2.70.240.10	:Distorted Sandwich	:Leukocidin-like	:Leukocidin/porin MspA
5k59C00	2.70.240.10	:Distorted Sandwich	:Leukocidin-like	:Leukocidin/porin MspA
5k59D00	2.70.240.10	:Distorted Sandwich	:Leukocidin-like	:Leukocidin/porin MspA
5k59E01	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins
5k59E02	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins
5k59F01	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins
5k59F02	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins
5k59H01	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins
5k59H02	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins
5k59L01	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins
5k59L02	2.60.40.10	:Sandwich	:Immunoglobulin-like	:Immunoglobulins