OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 5knl [ABC]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C

Title

CRYSTAL STRUCTURE OF S. POMBE UBIQUITIN E1 (UBA1) IN COMPLEX WITH UBC15 AND UBIQUITIN

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
5knl			28162934	X-RAY DIFFRACTION/2.5	SO4:SULFATE ION

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[ABC]	[ABC]	[ABC]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
329783	B:	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ubiquitin-related	automated matches	Pseudozyma antarctica [TaxId: 84753]
329812	C:1-167	Alpha and beta proteins (a+b)	UBC-like	UBC-like	automated matches	automated matches	Schizosaccharomyces pombe [TaxId: 284812]
329813	C:168-171	Artifacts	Tags	Tags	Tags	C-terminal Tags	Synthetic
329780	E:	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ubiquitin-related	automated matches	Pseudozyma antarctica [TaxId: 84753]
329788	F:1-167	Alpha and beta proteins (a+b)	UBC-like	UBC-like	automated matches	automated matches	Schizosaccharomyces pombe [TaxId: 284812]
329789	F:168-171	Artifacts	Tags	Tags	Tags	C-terminal Tags	Synthetic

CATH

CATH ID	Node	Architecture	Topology	Homology
5knlA01	3.50.50.80	:3-Layer(bba) Sandwich	:FAD/NAD(P)-binding domain	:Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1
5knlA02	3.40.50.12550	:3-Layer(aba) Sandwich	:Rossmann fold	:Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2
5knlA03	2.40.30.180	:Beta Barrel	:Elongation Factor Tu (Ef-tu); domain 3	:Ubiquitin-activating enzyme E1, FCCH domain
5knlA04	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5knlA05	1.10.10.2660	:Orthogonal Bundle	:Arc Repressor Mutant, subunit A	:Ubiquitin-activating enzyme E1, SCCH domain
5knlA06	3.10.290.60	:Roll	:Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	:Ubiquitin-activating enzyme E1, UFD domain
5knlC00	3.10.110.10	:Roll	:Ubiquitin Conjugating Enzyme	:Ubiquitin Conjugating Enzyme
5knlD01	3.50.50.80	:3-Layer(bba) Sandwich	:FAD/NAD(P)-binding domain	:Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1
5knlD02	3.40.50.12550	:3-Layer(aba) Sandwich	:Rossmann fold	:Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2
5knlD03	2.40.30.180	:Beta Barrel	:Elongation Factor Tu (Ef-tu); domain 3	:Ubiquitin-activating enzyme E1, FCCH domain
5knlD04	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5knlD05	1.10.10.2660	:Orthogonal Bundle	:Arc Repressor Mutant, subunit A	:Ubiquitin-activating enzyme E1, SCCH domain
5knlD06	3.10.290.60	:Roll	:Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	:Ubiquitin-activating enzyme E1, UFD domain
5knlF00	3.10.110.10	:Roll	:Ubiquitin Conjugating Enzyme	:Ubiquitin Conjugating Enzyme