OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 5n2i [A2]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
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Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

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Secondary Structure

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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B

Title

F420:NADPH OXIDOREDUCTASE FROM THERMOBIFIDA FUSCA WITH NADP+ BOUND

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
5n2i			28411200	X-RAY DIFFRACTION/1.8	GOL:GLYCEROL NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A2]	[A2]	[A2]

Interfaces

Interface ID	Chain	Inaterface Class	Interface Type	Contact Type
5n2i_AB	A B	HEN_iE HEN_iE	i1_CR(H11,E9,N15)_CE(H3,E3,N5)_HH(S1)_EE(Ah1,iE1)_HE(S2)_HN(L1,S4)_EN(L1,S4) i1_CR(H11,E9,N15)_CE(H3,E3,N5)_HH(S1)_EE(Ah1,iE1)_HE(S2)_HN(L1,S4)_EN(L1,S4)	c1_RP(HH4,EE16,NN12,HE3,HN5,NE7,EH3,NH4,EN8)_EE(S1)_HE(S2)_HN(L1,S3)_EN(L1,S5) c1_RP(HH4,EE16,NN12,HE3,HN5,NE7,EH3,NH4,EN8)_EE(S1)_HE(S2)_HN(L1,S3)_EN(L1,S5)

Interface Class

Interface ID	Interface 1						Interface 2
	Domain	Number of contact residues	Binding site Class	Percentages of Secondary structures(%)			Domain	Number of contact residues	Binding site Class	Percentages of Secondary structures(%)
	Domain	Number of contact residues	Binding site Class	H	E	N	Domain	Number of contact residues	Binding site Class	H	E	N
5n2i_AB	A	43	HEN_iE	32.6	100	30.2	B	41	HEN_iE	34.1	34.1	31.7

Interface Type: Information for each interface

Interface ID	chain	Number of contact residues			Number of elements					Number of contacts between Secondary structure elements
		Number of contact residues			Number of elements					HH			EE						HE			HN		EN
		Hn	En	Nn	H	E	N	R	L	P	A	S	P	A	S	Ph	Ah	Ih	P	A	S	L	S	L	S
5n2i_AB	A	14	43	13	2	5	6	0	0	0	0	0	1	0	1	1	1	1	1	0	3	1	2	1	6
5n2i_AB	B	14	14	13	2	5	6	0	0	0	0	0	1	0	2	1	0	1	0	0	4	2	1	1	6

Contact Type: Information of contacts between interfaces

Interface ID	Number of residue pairs between SS elements									Number of contacts between Secondary structure elements
	H-H	E-E	N-N	H-E	H-N	N-E	E-H	N-H	E-N	H-H				E-E					H-E				H-N			E-N
	H-H	E-E	N-N	H-E	H-N	N-E	E-H	N-H	E-N	P	A	S	Ih	P	A	S	IPh	IAh	P	A	S	Ih	L	S	Ih	L	S	Ih
5n2i_AB	20	15	15	15	7	10	15	8	10	0	1	2	0	0	0	0	0	1	2	0	6	0	0	6	0	2	6	0

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
x20682	_	Not Classified	Not Classified 206	Not Classified 206	Not Classified 206	Not Classified 206	Not Classified 20682

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
5n2iA00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5n2iB00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5n2iC00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5n2iD00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain