OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 5t6b [A]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

Download

Slab plane

Direction	Proportion
From front	%
From back	%
Move slab

Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A

Title

X-RAY STRUCTURE OF THE KIJD1 C3-METHYLTRANSFEERASE, CONVERTED TO MONOMERIC FORM

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
5t6b			27595766	X-RAY DIFFRACTION/2	MES:2-(N-MORPHOLINO)-ETHANESULFONIC ACID SAH:S-ADENOSYL-L-HOMOCYSTEINE TMP:THYMIDINE-5___sq___-PHOSPHATE ZN:ZINC ION

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A]	[A]	[A]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
322759	A:	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	C-3'-methyltransferase-like	automated matches	Actinomadura kijaniata [TaxId: 46161]
322794	B:	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	C-3'-methyltransferase-like	automated matches	Actinomadura kijaniata [TaxId: 46161]
322810	C:	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	C-3'-methyltransferase-like	automated matches	Actinomadura kijaniata [TaxId: 46161]
322784	D:	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	C-3'-methyltransferase-like	automated matches	Actinomadura kijaniata [TaxId: 46161]

CATH

CATH ID	Node	Architecture	Topology	Homology
5t6bA01	6.20.50.110	:Other non-globular	:N-terminal domain of TfIIb	:Methyltransferase, zinc-binding domain
5t6bA02	3.40.50.150	:3-Layer(aba) Sandwich	:Rossmann fold	:Vaccinia Virus protein VP39
5t6bA03	6.10.250.3100	:Helix non-globular	:Single alpha-helices involved in coiled-coils or other helix-helix interfaces	:
5t6bA04	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5t6bB01	6.20.50.110	:Other non-globular	:N-terminal domain of TfIIb	:Methyltransferase, zinc-binding domain
5t6bB02	3.40.50.150	:3-Layer(aba) Sandwich	:Rossmann fold	:Vaccinia Virus protein VP39
5t6bB03	6.10.250.3100	:Helix non-globular	:Single alpha-helices involved in coiled-coils or other helix-helix interfaces	:
5t6bB04	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5t6bC01	6.20.50.110	:Other non-globular	:N-terminal domain of TfIIb	:Methyltransferase, zinc-binding domain
5t6bC02	3.40.50.150	:3-Layer(aba) Sandwich	:Rossmann fold	:Vaccinia Virus protein VP39
5t6bC03	6.10.250.3100	:Helix non-globular	:Single alpha-helices involved in coiled-coils or other helix-helix interfaces	:
5t6bC04	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5t6bD01	6.20.50.110	:Other non-globular	:N-terminal domain of TfIIb	:Methyltransferase, zinc-binding domain
5t6bD02	3.40.50.150	:3-Layer(aba) Sandwich	:Rossmann fold	:Vaccinia Virus protein VP39
5t6bD03	6.10.250.3100	:Helix non-globular	:Single alpha-helices involved in coiled-coils or other helix-helix interfaces	:
5t6bD04	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain