OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 5vps [A]

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Title

CRYSTAL STRUCTURE OF AN SDR FROM BURKHOLDERIA AMBIFARIA IN COMPLEX WITH NADPH WITH A TCEP ADDUCT

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
5vps			32841567	X-RAY DIFFRACTION/1.45	9G1:[(4~{S})-3-AMINOCARBONYL-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXYMETHYL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]PIPERIDIN-4-YL]-TRIS(3-HYDROXY-3-OXOPROPYL)PHOSPHANIUM EDO:1,2-ETHANEDIOL

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A]	[A]	[A]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
334737	A:0-0	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
334736	A:1-259	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Burkholderia ambifaria [TaxId: 398577]

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
5vpsA00	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain