OLIGAMI : Oligomer Architecture and Molecular Interface

Direction	Proportion
From front	%
From back	%
Move slab

Title

STRUCTURE OF MURC FROM PSEUDOMONAS AERUGINOSA

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
5vvw			Not in PubMed	X-RAY DIFFRACTION/2.3	EDO:1,2-ETHANEDIOL

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A4]	[A4]	[A4]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
334989	A:104-319	Alpha and beta proteins (a/b)	Ribokinase-like	MurD-like peptide ligases, catalytic domain	automated matches	automated matches	Pseudomonas aeruginosa, PA01 [TaxId: 208964]
334990	A:15-15	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
334988	A:16-103	Alpha and beta proteins (a/b)	MurCD N-terminal domain	MurCD N-terminal domain	automated matches	automated matches	Pseudomonas aeruginosa [TaxId: 208964]
335035	B:104-319	Alpha and beta proteins (a/b)	Ribokinase-like	MurD-like peptide ligases, catalytic domain	automated matches	automated matches	Pseudomonas aeruginosa, PA01 [TaxId: 208964]
335036	B:15-15	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
335034	B:16-103	Alpha and beta proteins (a/b)	MurCD N-terminal domain	MurCD N-terminal domain	automated matches	automated matches	Pseudomonas aeruginosa [TaxId: 208964]
334948	C:104-319	Alpha and beta proteins (a/b)	Ribokinase-like	MurD-like peptide ligases, catalytic domain	automated matches	automated matches	Pseudomonas aeruginosa, PA01 [TaxId: 208964]
334949	C:15-15	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
334947	C:16-103	Alpha and beta proteins (a/b)	MurCD N-terminal domain	MurCD N-terminal domain	automated matches	automated matches	Pseudomonas aeruginosa [TaxId: 208964]
334981	D:104-319	Alpha and beta proteins (a/b)	Ribokinase-like	MurD-like peptide ligases, catalytic domain	automated matches	automated matches	Pseudomonas aeruginosa, PA01 [TaxId: 208964]
334982	D:15-15	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
334980	D:16-103	Alpha and beta proteins (a/b)	MurCD N-terminal domain	MurCD N-terminal domain	automated matches	automated matches	Pseudomonas aeruginosa [TaxId: 208964]
334954	E:104-318	Alpha and beta proteins (a/b)	Ribokinase-like	MurD-like peptide ligases, catalytic domain	automated matches	automated matches	Pseudomonas aeruginosa, PA01 [TaxId: 208964]
334956	E:15-15	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
334953	E:16-103	Alpha and beta proteins (a/b)	MurCD N-terminal domain	MurCD N-terminal domain	automated matches	automated matches	Pseudomonas aeruginosa [TaxId: 208964]
334964	F:104-319	Alpha and beta proteins (a/b)	Ribokinase-like	MurD-like peptide ligases, catalytic domain	automated matches	automated matches	Pseudomonas aeruginosa, PA01 [TaxId: 208964]
334965	F:15-15	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
334963	F:16-103	Alpha and beta proteins (a/b)	MurCD N-terminal domain	MurCD N-terminal domain	automated matches	automated matches	Pseudomonas aeruginosa [TaxId: 208964]
335017	G:104-319	Alpha and beta proteins (a/b)	Ribokinase-like	MurD-like peptide ligases, catalytic domain	automated matches	automated matches	Pseudomonas aeruginosa, PA01 [TaxId: 208964]
335018	G:15-15	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
335016	G:16-103	Alpha and beta proteins (a/b)	MurCD N-terminal domain	MurCD N-terminal domain	automated matches	automated matches	Pseudomonas aeruginosa [TaxId: 208964]
334992	H:104-319	Alpha and beta proteins (a/b)	Ribokinase-like	MurD-like peptide ligases, catalytic domain	automated matches	automated matches	Pseudomonas aeruginosa, PA01 [TaxId: 208964]
334993	H:15-15	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
334991	H:16-103	Alpha and beta proteins (a/b)	MurCD N-terminal domain	MurCD N-terminal domain	automated matches	automated matches	Pseudomonas aeruginosa [TaxId: 208964]

CATH

CATH ID	Node	Architecture	Topology	Homology
5vvwA01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5vvwA02	3.40.1190.10	:3-Layer(aba) Sandwich	:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	:Mur-like, catalytic domain
5vvwB01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5vvwB02	3.40.1190.10	:3-Layer(aba) Sandwich	:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	:Mur-like, catalytic domain
5vvwC01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5vvwC02	3.40.1190.10	:3-Layer(aba) Sandwich	:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	:Mur-like, catalytic domain
5vvwD01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5vvwD02	3.40.1190.10	:3-Layer(aba) Sandwich	:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	:Mur-like, catalytic domain
5vvwE01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5vvwE02	3.40.1190.10	:3-Layer(aba) Sandwich	:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	:Mur-like, catalytic domain
5vvwF01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5vvwF02	3.40.1190.10	:3-Layer(aba) Sandwich	:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	:Mur-like, catalytic domain
5vvwG01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5vvwG02	3.40.1190.10	:3-Layer(aba) Sandwich	:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	:Mur-like, catalytic domain
5vvwH01	3.40.50.720	:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
5vvwH02	3.40.1190.10	:3-Layer(aba) Sandwich	:UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	:Mur-like, catalytic domain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	F
C	G
D	H

Color

Style

Secondary Structure

Download

Slab plane

Chain