PDB ID : 5yec [A2B2]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


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Slab plane

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Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AA
BB
CC
DD
Title
CRYSTAL STRUCTURE OF ATG7CTD-ATG8-MGATP COMPLEX IN FORM II

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
5yec
29237558 X-RAY DIFFRACTION/2.15 ATP:ADENOSINE-5___sq___-TRIPHOSPHATE
MG:MAGNESIUM ION
ZN:ZINC ION
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A2B2] [A2B2] [A2B2]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
348862 B:Alpha and beta proteins (a+b)beta-Grasp (ubiquitin-like)Ubiquitin-likeautomated matchesautomated matchesBaker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
348852 D:Alpha and beta proteins (a+b)beta-Grasp (ubiquitin-like)Ubiquitin-likeautomated matchesautomated matchesBaker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]

CATH
CATH ID Node Class Architecture Topology Homology
5yecA003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
5yecB003.10.20.90:Roll:Ubiquitin-like (UB roll):Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
5yecC003.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
5yecD003.10.20.90:Roll:Ubiquitin-like (UB roll):Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1