OLIGAMI : Oligomer Architecture and Molecular Interface

PDB ID : 6acq [A6]

Color

AR^a IR^b

Chain(OLIGAMI)
Chain(PDB)
Domain
CPK
Secondary Structure
Polar(blue)/
Nonpolar(white)

^a AR:All Residues
^b IR:Interface Residues

Style

Secondary Structure

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Slab plane

Direction	Proportion
From front	%
From back	%
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Chain

Chain name		Ribbon	Spacefill	Cαonly
OLIGAMI	PDB
A	A
B	B
C	C
D	D
E	E
F	F

Title

CRYSTAL STRUCTURE OF (S)-3-HYDROXYBUTYRYL-COA DEHYDROGENASE FROM CLOSTRIDIUM ACETOBUTYLICUM, APO FORM

Structure Summary

PDB ID	Mutant	OPM	Pub Med	Method/Resolution	HETNAM
6acq			30387779	X-RAY DIFFRACTION/2.5

Chain Formula
Amino Acid sequence	SCOPe Family Level	CATH Homology Level
[A6]	[A6]	[A6]

Structual Classification

SCOPe

SCOPe ID	Chain	Class	Fold	Superfamily	Family	Protein Domain	Species
359747	A:1-183	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359758	A:184-281	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359865	B:-8-0	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
359863	B:1-183	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359864	B:184-280	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359984	C:1-183	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359985	C:184-281	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359926	D:1-183	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359927	D:184-281	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359740	E:1-183	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359763	E:184-281	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359766	F:-8-0	Artifacts	Tags	Tags	Tags	N-terminal Tags	Synthetic
359743	F:1-183	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]
359755	F:184-281	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	automated matches	automated matches	Clostridium acetobutylicum [TaxId: 272562]

CATH

CATH ID	Node	Class	Architecture	Topology	Homology
6acqA01	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
6acqA02	1.10.1040.10		:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
6acqB01	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
6acqB02	1.10.1040.10		:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
6acqC01	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
6acqC02	1.10.1040.10		:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
6acqD01	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
6acqD02	1.10.1040.10		:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
6acqE01	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
6acqE02	1.10.1040.10		:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
6acqF01	3.40.50.720		:3-Layer(aba) Sandwich	:Rossmann fold	:NAD(P)-binding Rossmann-like Domain
6acqF02	1.10.1040.10		:Orthogonal Bundle	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	:N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2