PDB ID : 6gpl [A4]

Color

ARa IRb





 a AR:All Residues
 b IR:Interface Residues

Style





Secondary Structure


Download

Slab plane

Direction Proportion
From front %
From back %
Move slab

Chain
Chain name Ribbon Spacefill Cαonly
OLIGAMI PDB
AB
BC
CD
DE
Title
CRYSTAL STRUCTURE OF HUMAN GDP-D-MANNOSE 4,6-DEHYDRATASE IN COMPLEX WITH GDP-4K6D-MAN

Structure Summary
PDB ID Mutant OPM Pub Med Method/Resolution HETNAM
6gpl
30984471 X-RAY DIFFRACTION/1.76 BCN:BICINE
EDO:1,2-ETHANEDIOL
F7E:[[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYLIDENE-1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] [(2~{R},3~{S},4~{R},6~{R})-6-METHYL-3,4-BIS(OXIDANYL)-5-OXIDANYLIDENE-OXAN-2-YL] HYDROGEN PHOSPHATE
NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Chain Formula
Amino Acid sequence SCOPe Family Level CATH Homology Level
[A4] [A4] [A4]

Structual Classification
SCOPe
SCOPe ID Chain Class Fold Superfamily Family Protein Domain Species
354955 B:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesGDP-mannose 4,6-dehydrataseHuman (Homo sapiens) [TaxId: 9606]
354944 C:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesGDP-mannose 4,6-dehydrataseHuman (Homo sapiens) [TaxId: 9606]
354954 D:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesGDP-mannose 4,6-dehydrataseHuman (Homo sapiens) [TaxId: 9606]
354969 E:Alpha and beta proteins (a/b)NAD(P)-binding Rossmann-fold domainsNAD(P)-binding Rossmann-fold domainsTyrosine-dependent oxidoreductasesGDP-mannose 4,6-dehydrataseHuman (Homo sapiens) [TaxId: 9606]

CATH
CATH ID Node Class Architecture Topology Homology
6gplB013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
6gplB023.90.25.10:Alpha-Beta Complex:UDP-galactose 4-epimerase; domain 1:UDP-galactose 4-epimerase, domain 1
6gplC013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
6gplC023.90.25.10:Alpha-Beta Complex:UDP-galactose 4-epimerase; domain 1:UDP-galactose 4-epimerase, domain 1
6gplD013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
6gplD023.90.25.10:Alpha-Beta Complex:UDP-galactose 4-epimerase; domain 1:UDP-galactose 4-epimerase, domain 1
6gplE013.40.50.720:3-Layer(aba) Sandwich:Rossmann fold:NAD(P)-binding Rossmann-like Domain
6gplE023.90.25.10:Alpha-Beta Complex:UDP-galactose 4-epimerase; domain 1:UDP-galactose 4-epimerase, domain 1