PDB ID : 6huy [AB]
Color
ARa IRb
|
|
a AR:All Residues
b IR:Interface Residues
b IR:Interface Residues
Slab plane
Title
HMDII FROM DESULFUROBACTERIUM THERMOLITHOTROPHUM RECONSTITUED WITH FE- GUANYLYLPYRIDINOL (FEGP) COFACTOR AND CO-CRYSTALLIZED WITH METHENYL- TETRAHYDROFOLATE FORM A
Structure Summary
| PDB ID | Mutant | OPM | Pub Med | Method/Resolution | HETNAM |
|---|---|---|---|---|---|
| 6huy | 30600878 | X-RAY DIFFRACTION/2.25 | CSO:S-HYDROXYCYSTEINE DMS:DIMETHYL SULFOXIDE FE9:IRON-GUANYLYL PYRIDINOL COFACTOR GOL:GLYCEROL GUE:5,10-METHENYLTETRAHYDROFOLATE PG4:TETRAETHYLENE GLYCOL |
| Chain Formula | ||
|---|---|---|
| Amino Acid sequence | SCOPe Family Level | CATH Homology Level |
| [AB] | [AB] | [AB] |
Interfaces
| Interface ID | Chain | Inaterface Class |
Interface Type | Contact Type |
|---|---|---|---|---|
| 6huy_AB | A B |
HEN HEN |
i13_CR(H43,E3,N26)_CE(H9,E2,N8)_HH(A2,S5)_HE(S2)_HN(L3,S12)_EN(S3) i13_CR(H43,E3,N26)_CE(H9,E2,N8)_HH(A2,S5)_HE(S2)_HN(L3,S12)_EN(S3) |
c1_RP(HH57,NN17,HE5,HN52,NE2,EH4,NH51,EN1)_HH(P3,A2,S10)_HE(P1,S1)_HN(L12,S11)_EN(S2) c1_RP(HH57,NN17,HE5,HN52,NE2,EH4,NH51,EN1)_HH(P3,A2,S10)_HE(P1,S1)_HN(L12,S11)_EN(S2) |
Interface Class
| Interface ID | Interface 1 | Interface 2 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Domain | Number of contact residues | Binding site Class | Percentages of Secondary structures(%) | Domain | Number of contact residues | Binding site Class | Percentages of Secondary structures(%) | |||||
| H | E | N | H | E | N | |||||||
| 6huy_AB | A | 132 | HEN | 67.4 | 100 | 28.8 | B | 131 | HEN | 64.9 | 3.8 | 31.3 |
Interface Type: Information for each interface
| Interface ID | chain | Number of contact residues | Number of elements | Number of contacts between Secondary structure elements | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HH | EE | HE | HN | EN | |||||||||||||||||||||
| Hn | En | Nn | H | E | N | R | L | P | A | S | P | A | S | Ph | Ah | Ih | P | A | S | L | S | L | S | ||
| 6huy_AB | A | 89 | 132 | 38 | 11 | 2 | 11 | 0 | 0 | 1 | 2 | 9 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 7 | 15 | 1 | 1 |
| 6huy_AB | B | 85 | 5 | 41 | 11 | 2 | 14 | 0 | 0 | 1 | 2 | 11 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 7 | 17 | 1 | 1 |
Contact Type: Information of contacts between interfaces
| Interface ID | Number of residue pairs between SS elements | Number of contacts between Secondary structure elements | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| H-H | E-E | N-N | H-E | H-N | N-E | E-H | N-H | E-N | H-H | E-E | H-E | H-N | E-N | |||||||||||||||
| P | A | S | Ih | P | A | S | IPh | IAh | P | A | S | Ih | L | S | Ih | L | S | Ih | ||||||||||
| 6huy_AB | 191 | 0 | 52 | 8 | 49 | 2 | 9 | 44 | 2 | 7 | 13 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 8 | 28 | 0 | 0 | 2 | 0 |
Structual Classification
SCOPe
| SCOPe ID | Chain | Class | Fold | Superfamily | Family | Protein Domain | Species |
|---|---|---|---|---|---|---|---|
| x8350 | _ | Not Classified | Not Classified 83 | Not Classified 83 | Not Classified 83 | Not Classified 83 | Not Classified 8350 |
CATH
| CATH ID | Node | Class | Architecture | Topology | Homology |
|---|---|---|---|---|---|
| 6huyA01 | 3.40.50.720 | :3-Layer(aba) Sandwich | :Rossmann fold | :NAD(P)-binding Rossmann-like Domain | |
| 6huyC01 | 3.40.50.720 | :3-Layer(aba) Sandwich | :Rossmann fold | :NAD(P)-binding Rossmann-like Domain |
