- Classes: Alpha and beta proteins (a/b)
- Folds: S-adenosyl-L-methionine-dependent methyltransferases
- Superfamilies: S-adenosyl-L-methionine-dependent methyltransferases
- Families: C-3'-methyltransferase-like
- Protein Domains: TcaB9
- Species: Micromonospora chalcea [TaxId: 1874]
PDB Entries
| PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
|---|---|---|---|---|---|---|---|---|
| Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
| 3ndi | [A] | [A] | [A] | 1.5 | PO4:PHOSPHATE ION SAM:S-ADENOSYLMETHIONINE TMP:THYMIDINE-5___sq___-PHOSPHATE ZN:ZINC ION | |||
| 3ndj | [A] | [A] | [A] | 1.5 | JHZ:(2R,4S,6R)-4-AMINO-4,6-DIMETHYL-5-OXOTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE (NON-PREFERRED NAME) PO4:PHOSPHATE ION SAH:S-ADENOSYL-L-HOMOCYSTEINE ZN:ZINC ION | |||
| 4e2w |  | [A] | [A] | [A] | 1.5 | EDO:1,2-ETHANEDIOL JHZ:(2R,4S,6R)-4-AMINO-4,6-DIMETHYL-5-OXOTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE (NON-PREFERRED NAME) SAH:S-ADENOSYL-L-HOMOCYSTEINE ZN:ZINC ION | ||
| 4e2x | | [A] | [A] | [A] | 1.4 | EDO:1,2-ETHANEDIOL SAH:S-ADENOSYL-L-HOMOCYSTEINE TYD:THYMIDINE-5___sq___-DIPHOSPHATE ZN:ZINC ION | ||
| 4e2y | | [A] | [A] | [A] | 1.8 | JHZ:(2R,4S,6R)-4-AMINO-4,6-DIMETHYL-5-OXOTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE (NON-PREFERRED NAME) SAH:S-ADENOSYL-L-HOMOCYSTEINE ZN:ZINC ION | ||
| 4e2z | | [A] | [A] | [A] | 1.41 | EDO:1,2-ETHANEDIOL JHZ:(2R,4S,6R)-4-AMINO-4,6-DIMETHYL-5-OXOTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE (NON-PREFERRED NAME) SAH:S-ADENOSYL-L-HOMOCYSTEINE ZN:ZINC ION | ||
| 4e30 | | [A] | [A] | [A] | 1.5 | EDO:1,2-ETHANEDIOL SAH:S-ADENOSYL-L-HOMOCYSTEINE TYD:THYMIDINE-5___sq___-DIPHOSPHATE ZN:ZINC ION | ||
| 4e31 | | [A] | [A] | [A] | 1.75 | EDO:1,2-ETHANEDIOL JHZ:(2R,4S,6R)-4-AMINO-4,6-DIMETHYL-5-OXOTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE (NON-PREFERRED NAME) SAH:S-ADENOSYL-L-HOMOCYSTEINE ZN:ZINC ION | ||
| 4e32 | [A] | [A] | [A] | 1.5 | DWN:(2R,4S,6R)-4-AMINO-6-METHYL-5-OXOTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYLDIHYDROGEN DIPHOSPHATE EDO:1,2-ETHANEDIOL SAH:S-ADENOSYL-L-HOMOCYSTEINE ZN:ZINC ION | |||
| 4e33 | [A] | [A] | [A] | 1.6 | 0N2:(2R,4S,5R,6R)-4-AMINO-5-HYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE SAH:S-ADENOSYL-L-HOMOCYSTEINE ZN:ZINC ION | |||
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
